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1. Segmenter (Matlab)

2. SCPipeline (Cell Profiler vX.X)

3. CP_InitialSheet_Blank (Excel)


1. Segmenter: This application segments each well of the composite image into individual files. Output is .tif

2. SCPipeline: This application runs each image file from 'Segmenter' through a series of image filters and identifies well contents. Output is .csv

3. CP_InitialSheet_Blank: This application allows copy-paste function of all data in SCPipeline .csv and generates graphical representation of well contents

***NOTE*** for apps 1 and 2 the .pdf must be removed in file name after download.

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