1. Segmenter (Matlab)
2. SCPipeline (Cell Profiler vX.X)
3. CP_InitialSheet_Blank (Excel)
1. Segmenter: This application segments each well of the composite image into individual files. Output is .tif
2. SCPipeline: This application runs each image file from 'Segmenter' through a series of image filters and identifies well contents. Output is .csv
3. CP_InitialSheet_Blank: This application allows copy-paste function of all data in SCPipeline .csv and generates graphical representation of well contents
***NOTE*** for apps 1 and 2 the .pdf must be removed in file name after download.